published by KARGER , Basel 2002, supported bySERONO SYMPOSIA read Reviews of this book MOLECULES OF LIFE & MUTATIONS by Professor Siegfried Schwarz, M.D., Laboratory of Molecular Endocrinology 1. LIGANDS Small Molecules PDB# PDBsum Genecards Locus OMIM# 1.1 Calcium and Non-Peptidic Small Molecules Ca + Calmodulin 1CLM *** CALM1 14q24 114180 Ca + E-Selectin 1ESL *** SELE 1q23 131210 Mellitin 2MLT Daunomycin + ssDNA 110D Mitomycin + dsDNA 199D Transthyretin + T3 1THA *** TTR 18q11.2 176300 1.2 Peptide Hormones Acidic Fibroblast Growth Factor 1AFG *** FGF1 5q31 131220 Basic Fibroblast Growth Factor 1BFG *** FGF2 4q25-27 134920 Epidermal Growth Factor 1EPI *** EGF 4q25 131530 Granulocyte Colony Stimulating Factor 1BFD *** CSF3 17q11.2 138970 Glucagon 1-29 1GCN *** GCG 2q36 139030 Human Chorionic Gonadotropin-ß (hCG) 1HRP *** CGB 19q13 118860 Luteinizing Hormone-ß LHB 19q13.32 152780 alpha-Subunit CGA 6q21.1 118850 Growth Hormone (HGH) 3HHR *** GH1 17q22-24 139250 Insulin 1APH *** INS 11p15.5 176730 mutated Insulin "Chicago" 1HIQ *** - - - Insulin-like Growth Factor (IGF-1) 1GF1 *** IGF1 12q22 147440 Interferon-gamma (IFNg) 1RFB *** IFNG 12q14 147570 Interleukin 1ß (IL-1ß) 2MIB *** IL1B 2q14 147720 Nerve Growth Factor (NGß) 1BET *** NGFB 1p13.1 162030 Oxytocin 1XY1 *** OXT 20p13 167050 Arginin-Vasopressing (AVP) (= Oxytocin) + Neurophysin 2 1NPO AVP 20p13 192340 Parathyroid hormone 1-37 (PTH) 1HPH *** PTH 11p15.3 168450 Platelet-Derived Growth Factor (PDGF) 1PDG *** PDGFA 7p22 173430 PDGFB 22q12.3 190040 Transforming Growth Factor-alpha (TGFa) 2TGF *** TGFA 2p13 190170 Transforming Growth Factor-beta (TGFß) 1TFG *** TGFB1 19q13.1 190180 Tumor Necrosis Factor-alpha (TNFa) 1TNF *** TNF 6p21.3 191160 TNFa + Receptor 1TNR *** TNFRSF1A 12p13.2 191190 1.3 Peptide Toxins Bungarotoxin + nicotinic AcCh-Receptor 1ABT *** CHRNA1 2q24 100690 Charybdotoxin (Scorpion) 1PTX *** KCNQ1 11p15.5 607542 Choleratoxin (B-subunit) 2CHB *** GNAS 20q13.2 139320 Sarafotoxin 1SRB *** EDNRB 13q22 131244 W-Conotoxin GVIa 1OMC *** GRIN1 9q34 138249 LIGAND-BINDING PROTEINS Large Molecules 2. Enzymes Carbonic anhydrase + bicarb. 1CAM *** CA1 8q22 114800 Citrate synthase 5CSC *** CS 12p11 118950 Cyclin-dependent Kinase 2 (CdK2) 1B38 *** CDK2 12q13 116953 CdK2 + Cyclin A 1QMZ *** CCNA1 ? 604036 DNA polymerase (KLENOW fragt.) + dCTP 1KFD *** POLD1 19q13.3 174761 DNA sliding clamp 1B77 *** HNPCC 2p22-p21 120435 HIV1-protease+ non-pept.INH 4PHV *** - - - HIV2-protease+ renin-INH-peptide 2PHV *** - - - HIV1-reverse transcriptase + nevirapin 3HVT *** - - - P450 SCC Enzyme + Hem + CAM 1SCC *** CYP11A 15q23 118485 Phospholipase A2 (secretory) 1KVO *** PLA2G2A 1p35 172411 1BP2 *** Renin + peptidic INH 1SMR *** REN 1q32 179820 RNase/Angiogenin-Inhibitor (RAI) 1A4Y *** RNH 11p15.5 173320 RNase 2BNH *** ANG=RNASE5 14q11 105850 3,20-Steroid dehydrogenase + Carbenoxn. 1HDC *** HSD3B2 1p13.1 201810 3. Membrane Receptors, Channels ATP Synthase F1 unit 1BMF *** ATP5A1 18q12-q21 164360 hCG Receptor + hCG 1HRP *** LHCGR 2p21 152790 HGH Receptor + HGH 3HHR *** GHR 5p13 600946 GH1 17q22 139250 IL-4 Receptor + IL-2 1ILM *** IL2R 10p15 147730 IL2 4q26 147680 Porin 3POR *** VDAC1 5q31 604492 [Aquaporin 1-Tetramer] 1J4N *** AQP2 12q13 107777 Rhodopsin + Retinal 1BRD *** RHO 3q21 180380 TNFa Receptor + TNFa 1TNR *** TNFRSF1A 12p13.2 191190 4. Signal Transduction Proteins Calmodulin + myosin light chain kinase 1CDL *** MYLK 3cen-q21 600922 G-Protein inhibitory Gia + GTPgS 1GIA *** GNAI1 7q21 139310 G-Protein inhibitory Gia + GDP + Mg 1GFI *** GNAI1 7q21 139310 [G-Protein stimulatory Gsa GNAS1 20q13.2 139320] Insulin receptor tyrosin kinase 1IRK *** INSR 19q13.2 147670 Protein kinase A + ATP + peptid.INH 1ATP *** PRKAR2A 3p21.3-p21.2 176910 Ras p21 + GDP + Mg 1CRQ *** HRAS 11p15.5 190020 SH2 Domain + Peptide 1SPS *** - - - Transducin + GDP 1TAD *** GNAT1 3p21 139330 5. Multimodular Adhesion Proteins Cadherin Module 1NCG *** CDH1 16q22.1 192090 CD2, Immunoglobuline-like Module 1CDB *** CD2 1p13.1 186990 Fibronectin Type I-Module + RGD-Motif 1FBR *** FN1 2q34 135600 EGF-Module 1APO *** - - - 6. DNA-Binding Proteins DNA Polymerase (human) + dsDNA 1BPX *** POLB 8p11.2 174760 DNA Polymerase (T4 Phage) + dsDNA 1T7P *** - - - DNA polymerase (KLENOW fragt.) + dCTP 1KFD *** POLD1 19q13.3 174761 DNA sliding clamp 1B77 *** HNPCC 2p22-p21 120435 Endonuclease EcoRv (bacterial) 2RVE *** DNASE1 16p13.3 125505 Fab of antibody + TTT trinucleotide 1CBV *** SLEB1 1q41-q42 152700 Fos:Jun Protooncogen + dsDNA 1FOS *** FOS 14q24.3 164810 JUN 1p32 165160 GATA-Binding Protein + GATA-Box 1GAT *** GATA1 Xp11.23 305371 Glucocorticoid Receptor + dsDNA 1GLU *** GRL 5q31 138040 Histone Complex 1AOI *** H4F2 1q21 142750 Max + dsDNA 1HLO *** MAX 14q23 154950 MyoD + dsDNA 1MDY *** MYOD1 11q15.4 159970 NFkB + dsDNA 1SVC *** NFKB1 4q23 164011 Telomer-Binding Protein + RNA 1OTC *** TERF1 8q13 600951 Nucleosmal Complex + dsDNA 1AOI *** HIST1H1A 142709 Pit-1 + dsDNA 1AU7 *** POU1F1 3p11 173110 Progesterone Receptor + Progesterone 1A28 *** PGR 11q22 607311 RXR + T3R + dsDNA 2NLL *** RARA 17q12 180240 T3R 1BSX *** THRA 3p24.3 190160 SRY Protein + ssDNA 1HRY *** SRY Yp11.3 480000 Telomere-Binding Protein + RNA 1OTC *** TERF1 8q13 600951 TITF1 or Vnd or NKX2-1 1NK3 *** NKX2A 14q13 600635 p53 1TSR *** TP53 17p13.1 191170 7. Immunological Proteins Antibody, complete immunoglobulin G 1IGT *** 14q32.33 147100 Complement Component C5a 1C5A *** C5 9q34.1 120900 Cyclophilin + Cyclosporin 2RMA *** PPID 4q31.3 601753 Fab of antibody + TTT trinucleotide 1CBV *** SLEB1 1q41-q42 152700 Fab of antibody + Lysozyme 1BQL *** BTK Xq21.3-q22 300300 Fab of antibody + Progesterone 1DBB *** - - - Fab of antibody + Peptide 2IGF *** - - - Fab of antibody + Trisaccharide 1MFD *** - - - HIV gp120 core protein + CD4 + Fab 1GC1 *** CD4 12pter 186940 HLA-DR + Influenza Virus Hemagglutinin 1DLH *** HLA-DRA 6p21.3 142860 T Cell Receptor + HTLV1-Tax + HLA-A +ß2M 1AO7 *** TCRA 14q11.2 186880 8. Miscellaneous Macromolecules Apolipoprotein A1 1AV1 *** APOA1 11q23 107680 ß2-Crystallin 1BLB *** CRYBA1 17q11.1 123610 Collagen (Gly-Pro-Pro) 1BBE *** COL1A1 17q21.31 120150 Foot & Mouth Virus Disease Coat Protein 1BBT *** - - - GroEl Chaperone 1OEL *** HSPD1 ? 118190 Hemoglobin A 2HBC *** HBA1 16pter 141800 Proteasome 1PML *** PSMA5 1p13 176844 Spectrin Modules 2SPC *** SPTA1 1q21 182860 Ubiquitin 1AAR *** UBB 17p12-p11.1 191339 A FEW RELATED LINKS Major 3D Molecular Structure Websites (University of Massachusetts, Amherst) ExPASy - SWISS-PROT SCOP (Structural Classification of Proteins) RasMol and Chime (University of Massachusetts, Amherst) Animated Tutorials on Biomolecular Structures Where to get "Molecules" for RasMol to display? RasMol Gallery Rotating RasMol Images 3D Molecular Tutorials History of Visualization of Biological Macromolecules
Webpage created by Siegfried Schwarz, former webmaster of this division, last update: May 31, 2017