Core Facility:
Core Facility Bioinformatics
Head:
Mag.rer.nat. Dr.techn., Dietmar Rieder
Contact / booking:
dietmar.rieder@i-med.ac.at
Tel: +43 512 9003 71402
Biocenter/CCB (Innrain 80-82), 4th floor, room n° M04.413
- Consultation services for experimental setup and data collection (number of samples needed, methodology and parameters for sequencing, possibilities and limits of data analytics (included in the user fee)
- Data analytics
- Development of specific tools and pipelines
- Autonomous use of HPC infrastructure after first-time introduction
Service
unit
Unit price/h (MUI internal fee)
Unit price (external academic use)
RNA-sequencing (bulk):
transcript quantification, DEG analysis
transcript quantification, DEG analysis
Experiment (12 samples)
EUR 200.-
+EUR 10.- / additional sample
EUR 400.-
+EUR 15.- / additional sample
ChIP-Seq: peak calling and annotation
Experiment (12 samples)
EUR 250.-
+EUR 10.- / additional sample
EUR 500.-
+EUR 15.- / additional sample
Bisulfite sequencing: quantification/CpG, functional annotation
Experiment (12 samples)
EUR 250.-
+EUR 10.- / additional sample
EUR 500.-
+EUR 15.- / additional sample
ATAC-seq:peak calling and annotation
Experiment (12 samples)
EUR 250.-
+EUR 10.- / additional sample
EUR 500.-
+EUR 15.- / additional sample
Exome-sequencing (WES):
Variant calling and annotation
Variant calling and annotation
Experiment (12 samples)
EUR 300.-
+EUR 10.- / additional sample
EUR 600.-
+EUR 15.- / additional sample
NeoAntigen:
prediction, annotation, ranking
prediction, annotation, ranking
Experiment (12 samples)
EUR 350.-
+EUR 10.- / additional sample
EUR 700.-
+EUR 15.- / additional sample
scRNA-seq:
pre-processing
pre-processing
Experiment (12 samples)
EUR 200.-
+EUR 10.- / additional sample
EUR 400.-
+EUR 15.- / additional sample
Custom analysis on demand, consulting
Experiment
On rquest
EUR 100.-/ Stunde
HPC
location
unit
Unit price/h (MUI internal fee)
Unit price (external academic use)
Daten Speicher
Rennweg 29a
200 GB / Monat
EUR 0.5-
EUR 10.-
User account
User/Monat
EUR 20.-